Scaffold Ga0211579_10016261

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10016261
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4903
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019113	Metagenome	231	Y
F034892	Metagenome	173	Y
F042854	Metagenome	157	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100162612	F042854	GAG	MEITLSEFDRELERYTRRRMRELRGETDIPWSEDPFIEAYTQRRIRELRLEHEMEQREVDLDNVALGGYTVATMEAYSGKT
Ga0211579_100162613	F019113	N/A	MTETFEVGDLVRDKLNMGDQSYGLGVVVKTESTGLIGEQAPHREPNTGWTEATEGDPDIPGKRYDVYFNKFERTITFHGDYLERV
Ga0211579_100162616	F034892	N/A	MGIDVGDLIRIRGKDWLGKRLGIVTEVRALVHDQSGTKYNAVTALIAGQYYTFPDDAFELVTAAERKKN
Ga0211579_100162617	F100958	AGGAG	MVFHADYEVDFEIYEKQADDWRSQLLGHMCGLNPEDAKARWLEAHQISPERNERIHAIPVLEEWG