Scaffold Ga0211579_10015335

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10015335
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5071
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F035329	Metagenome	172	Y
F090495	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100153351	F035329	N/A	MATRKSLVIVSGLFEELNSSSDKLDFGGNTTADLTENTNLYYTNA
Ga0211579_100153354	F002215	GGA	MEIELIAAVISGSIGVFAGLTRALGNFNKKLDRRFYNVESNLDKLKNEVLHDYVLKEDFLREMQAVHTKLDRILDHLLAKS
Ga0211579_100153355	F090495	N/A	MAVQILSRRSSVLHDRPFPTRIGVAELALNNNASQPGLFFADNTASPNTGLVKIGPIAVGTSAPNASAVGFTSNSKGESWLDTTSTHILKVHDGTDWQVVKAVASIHTGYPANPVDGQIHYNKTTNKLVVWDQATTGWLNIGP