Scaffold Ga0211579

Basic Information
Taxon OID	3300020472 Open in IMG/M
Scaffold ID	Ga0211579_10010988 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020472 Open in IMG/M

Scaffold ID

Ga0211579_10010988 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6107
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6107

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.4813	Long. (^o)	-159.088	Alt. (m)	Depth (m)	115
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_132

Coordinates

Lat. (^o)

31.4813

Long. (^o)

-159.088

Alt. (m)

Depth (m)

115

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006717	Metagenome	366	Y
F007771	Metagenome / Metatranscriptome	345	Y
F009558	Metagenome	316	Y
F022974	Metagenome / Metatranscriptome	212	Y
F032811	Metagenome	179	Y
F056894	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1001098812	F009558	GGAG	MAYRHKSWEARHYWVNQFGIIEHDIFAHIPPQHYVVKWKEGYDRKEKHFDNKKEAQEFFRTVRKTATHFYRLVKWY
Ga0211579_1001098813	F007771	N/A	MKTIIYAKCIDKDVRLALYGMLEYAAVKLFPRRMKNTSIKLHLTHYDWDGEAMIEEGYTGRNPRNFKIVIDPYRIMKDDWDRELNYSEWVSKLLRTLAHEMVHVKQYIMGELTYKKGAMCWYGNEVGWMSAEEYFCSPHEVEAYGKEKWLQLGYTAVWNKIKNKEI
Ga0211579_100109886	F022974	AGG	MENETYYVAKLMKEGEFLSSEIFESLESARLWAMKETKLLVSDSYLKRCAADDIVVEIDEHFFGYECSVGELIRHNEREL
Ga0211579_100109887	F056894	GAG	MKLGMRNGKMVGTTELNERMNGATVLARLTKWGMEAFKFVNETSAMRARDRWRHSVMNETLSFDVIRGSRVWFVRVSERG
Ga0211579_100109888	F006717	AGGAG	MIELWIALVLTWYPSVERVVDKEFNSEKECWDYYETIIAPDTTLGEGKWGRQVLTAQDRRPDKNYFFKTNWDYPIRVYRGLNYDISKRGHDQVWLSCEPKYARVYNK
Ga0211579_100109889	F032811	GAG	MRIAKGCYFEQEEDEPIDPIRGKKTSVDKPNPIYYRKSELDDIPDDYATRIMNMRQSQKVIPEREVKTPDGFAVTIAYNKSGYQVIPEGDLKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211579_10010988

Overview

Ecosystem & Geography

Associated Families

Sequences