Scaffold Ga0211579_10008762

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211579_10008762

Scaffold Ga0211579_10008762

Overview

Basic Information
Taxon OID	3300020472 Open in IMG/M
Scaffold ID	Ga0211579_10008762 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6913
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.4813	Long. (^o)	-159.088	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020627	Metagenome / Metatranscriptome	223	Y
F091003	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100087626	F091003	AGGAG	MESNLYRMIQLLELQLVKTDLADAWLRRIWQDKINELMLKVSSLKR
Ga0211579_100087629	F020627	GGAGG	MSKPLDQMSTQELKLAWGKEAKDFLVGRKIVDVYYHSEKENEEIFGDMDARTNIKIVFDNGHWITASRDDEGNGSGVIFTTDPKLSVIPSI

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