Scaffold Ga0211579_10007646

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10007646
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7494
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F022108	Metagenome	216	Y
F056145	Metagenome	138	Y
F076605	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100076461	F015360	N/A	MDYLWAPKDEKLVSNLLDYIGVMPVGESTRYPAGVKYDALVAICDVISTNEKTASMVASRTHELQAQRRAKSIRAPSVDSVVSALASGKMSEADLKKAMKKAGLLK
Ga0211579_100076462	F006773	N/A	MSQATQTKTNLPWKNGSKEVDYFVEIGTTPYGKYGLYKEMIPVGTGSRGRHMELAREIRLSNPEVFENLELRQIVSRG
Ga0211579_100076467	F056145	GGAGG	VKFEINISDDDWKLMLKNRYGHRDVITRSYMLDIVHSIIDQIHDQ
Ga0211579_100076468	F022108	N/A	MIRAETSQSMSKDQYRHEANAFWELKSHIKYLSETTDFKGDEMKGHTLNKYGKEVIYRLKELTQKLEDSIKEGKEMKKEGFVYENYELKKKEVNK
Ga0211579_100076469	F076605	GGAG	MNQQDKYFVYRLAQQEEKTSYHFVGADFGSDVNKEAVYYGITSDPQMRLSKHRPRKGQDISLIVMAEFDNVYEGLAHEAKLVWEHVKKYGKAPKFQGMAGIGNKGYTYGGNK