Scaffold Ga0211579_10004896

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10004896
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9597
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F007052	Metagenome / Metatranscriptome	359	Y
F016675	Metagenome / Metatranscriptome	245	Y
F039176	Metagenome	164	Y
F055786	Metagenome	138	Y
F056894	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000489610	F007052	N/A	LTFWPSFDIIVVKDERRLTLMREKMKNNETYWVAKLSKKGEFLSSEIFESLEEARIWAMKEAKLLISHIEMLRMTNVGDIVVEIDKHFFGYEASSDEIIKNSVRVV
Ga0211579_1000489611	F000615	GAGG	MCRIRAFYECSDGTMGYSEMVVSYDEDIAGLIRHWSVGGKRMVITEYFEV
Ga0211579_1000489613	F039176	GAG	MKTMITGNAIDLSLNRSLEELISSYFEAHGAGIELDDDTRPEDIEAYFVLENYLADMGAI
Ga0211579_1000489615	F056894	GAG	MNLGKRNGKMVGTTELNERMNGATVLARLTKWGMEAFKFVNETQAVNARDRWRHSVMNETLNFDIIHGSRVWYVRVSTR
Ga0211579_1000489620	F055786	N/A	MICSYCYETQIRPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDGTWMDHKPEAIFGKKKHIPSPNFEKKKSIGAITDK
Ga0211579_100048966	F016675	AGGAG	MRNFEVDYETTLPPWHTGHEKIEAEDLDTAREKFSSKHEAARIYKVTEVLYSERFATK