NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10002023

Scaffold Ga0211579_10002023


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10002023 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15396
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F004439Metagenome438Y
F017718Metagenome / Metatranscriptome239Y
F105861Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000202313F002715AGGAMAEDELQNVKLKVGLLASEVEQRGQQIEALLQKLDLTTDKLQQLTVLIIQLNTRQEEYLRNSASMSQEFKILHTRIGDLHDKNLTMQKEIEARIDRLDQYKSKLMGMIIVVGGVVGTLVAAATGMFLKD
Ga0211579_1000202314F000245AGGAMKTFSRLKEGRLDDKMDKAVSDEIKKRKLARFPVNATDDYKMKNKKNLAFKFPTPSGEMMFHVYLRPMLPSKGQPKGVMAFNYDIEDK
Ga0211579_1000202315F004439GAGMKSFIQQQHLDEVVLRSSLSDMLFQPKITEYNRLMIPISSSMYKRIWPDNIRATVFHTTDVEGVKKIAKLQGKKTQISAFFAMQSRYMEIGVATQGGVHAVLEMDADILLSAKGDIMSYVDKGGRRWTTIADLEETSRYTNFGKVLRDMEKMFAALVPKYITRGEFQDYSTIFQIWHMAKRKVDSKTMSLIIRDYMDGMEKVIKDNLDTFSSVMRSYVKKRQSDYSWDEQIVNNIKVKKAHLFTLKLKDGENSLTPEQDELIEYIESKKWPFTKWDAAIDLEIYTREVANKELGK
Ga0211579_100020235F105861GAGMEKNDNYFVNKSEAEKLRNVSSLVNDIVNSKPEESLEVLDSSTETKEEVPEVINPIVDMVGKAISQHNPNKGNFFQGVQSDGNPKL
Ga0211579_100020236F017718AGGAGMATQNYDKADLELVNSQLTQIDDLLKKFSGFPDVQEKLRGAQEALKESEEEIMTYYDLTSLEKYNKS
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