NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10001941

Scaffold Ga0211579_10001941


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10001941 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15693
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009492Metagenome / Metatranscriptome317Y
F009778Metagenome313Y
F013814Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000194114F009778N/AMIPKLKDLLEDTWPKVAHTKKSLEWVGHDYIPLTPKVMKQIMGDTPVTAFHNVDWLKAKQQIPKVIGKKKSISTFTSDTQGNLSTGGGVQTMGGIVLQVQGKVLVAGTEDLGSVPDEAGRRWLAPSTLLGKILGMKQFDGGGGGIYYRKHLYNIDKKLEDMLYRYKTSLMVFKSDPQRVKDKYPPFTGKQKAELIKRYIDASNKFLLKNKKKIKKAFMNNVNNPKITTFMSKYGYNELLVYDTKVIDAYLVIDILGSANDYDKTERNLKRAKDGIKGYVKGKIYQGFASGVKKFINKRGGKV
Ga0211579_1000194122F013814N/AMFERLEFQGKLWQVIAKVDGSRLDNPNTLKSSYGCDMVIRNPQNIYFVLNEIIDVEYEDI
Ga0211579_1000194129F009492AGGAGMKKQSMKTLITGTILCLGLFGIVRANEVVTETTQPVVSVTGELSTDITFGDATTFTSPYTGLVFSGDGWVVSTNLSDGMVNVEEAKYMWSVVDGVTLTFGSQAEPYGLAWGLHRPSNNWFVSTPREHSITNGLGVGVDKWGVGINLFYGGGEENTTDDYWATKISYGFSLLGIASNVGLSLNSDDAQLLDVSVGSDIFETSLEYDLSEEADGAYWMRGVVKPSQMQGAFLLIGYNSDEVVTYGVGYKCSDNMKVISEFTSGLKDADGNEVENDFSIRASYSF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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