NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10001228

Scaffold Ga0211579_10001228


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10001228 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19632
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019562Metagenome / Metatranscriptome229N
F041247Metagenome / Metatranscriptome160N
F061913Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000122812F019562AGGMWYHKKFKLQYDTNVFNEMIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFKNSPQYFYDQFNHPVESFIVDSPVIFNTRMLHAVPRQLTDTGPRWVLMMDLFEWVDKLFDKIDNKTIWTDTKNFKNA
Ga0211579_100012288F041247AGGAGMTDFYSVEAKTLKFNKELLVDFYNTVDQTKWIHRQDKLPQYWPIDENNTFDRTHEFYKQLQSNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVEKVEHTNNTPIIYSANYMHGTAKSLKNKEDRITLVVDIKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211579_100012289F061913GAGMVEQGNFYVKCHHIYYNQQWLRDVLDSLKPSDWVDGTSVTGVTWTVEECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAILFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHDNGTPVFFDSRTLHAVPTPIDDEEERVVFSVNIHTHPTEMYKRAIDGTWLNKNTENIGVSND
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