Scaffold Ga0211579_10001044

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10001044
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21638
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F005947	Metagenome / Metatranscriptome	385	Y
F070647	Metagenome	123	N
F077792	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000104423	F005947	AGCAG	MSKKIFWSDKASPNQKYHGGYYFRAFDLVKFMKLVEKEEGEVVGLEFEDNNVNVIIKADD
Ga0211579_1000104430	F000126	N/A	MRDFKITRNKGEWYCVIVTDSYGTKYNNWFEHAHEANDWIYYIWENEEWFNHANSDELLGKAIQNCKEIDKNNNNLRKIL
Ga0211579_1000104431	F070647	N/A	MNKRDELAIEIMQELDNKYNMNNMLSLDEYVYEYYDVLTTNEKTDCFEIIEMIF
Ga0211579_1000104432	F077792	N/A	MYEVLEHWKQYKQEKDKLQQAKQLFEECGFQYKAKAKQEMDKFINKLVIKNGTTKY