Scaffold Ga0211579_10000874

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10000874
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23542
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007001	Metagenome / Metatranscriptome	360	Y
F009237	Metagenome / Metatranscriptome	321	Y
F017043	Metagenome / Metatranscriptome	243	Y
F055182	Metagenome / Metatranscriptome	139	Y
F083234	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000087415	F055182	N/A	MEQTLRMDDRHKPIEEAHKYGTCDDLDSKSCDLQIVPQFLSMVSMRDGWRRHTSDGWKDRLKEIKRTNPGSNIDT
Ga0211579_1000087416	F083234	N/A	MRTKKLENITQECVHSWPKSNLYSEFTKMTDILQWIEKNEKLSPDGKQFMGDLEHSLVKLFATKNNNANISI
Ga0211579_1000087421	F009237	AGG	MIKRLKELKSLIDNGSVPTIYEIAKIDCEEYTYSDLIALDYGFVQDLYIGSGNFEKWFTYTGPEPIKINDLTLQSNEMIEFVVTQIYDGIL
Ga0211579_1000087426	F007001	N/A	MTVKADVEVLKTKIEKIESSFDDHITQNREDFKEVHSRMSSMKREISDEINLTFEKLYDKIDENEKDIGGIEKWKWTLGGVMLALTFAMTVFSTFWAVHT
Ga0211579_100008747	F017043	AGGA	MQGNTKRQGRKHRSPEDVIRENDFLKYKLRDLQKYIRKLEYDNALFQRKQQINYARKNNRHYK