Scaffold Ga0211579_10000213

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10000213
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48926
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (82.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F013153	Metagenome	274	Y
F053286	Metagenome	141	Y
F105145	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000021324	F053286	GGAG	MNYQETLYGKQYLLGKDVYVDGKHKILNVPLIDLMDELGFIPEGEYTQIFTLAVVWYEIEEEIIVHQIYNHDTGEILWEDKTNDEWTDNDEQLLDALLMYGNLQETIGENYV
Ga0211579_1000021326	F105145	N/A	MTNKQLVNYIIDKFDGVIIDDYDREVHKVDGKPYNITFDRSRVEWSCSCPAFTYRRRFKTSKCKHIVQVQNERFQKLTKRNK
Ga0211579_1000021332	F003091	AGGAG	MSLKPMKPITKPGEGKPRQKYLTQEKYLEERYQISVGLQGPKRLENESFEDFQIRRKAENGLLKEYLRGVWKKDD
Ga0211579_1000021339	F013153	GGAG	LKKIFWVILILTLLTGSCDDRIEDPDRSNVIVTMLRVDRIEILDNLWITPSPIWGHLESEDSDVDRLVVHWWSNMYWNENDSSGHYRLLSNRRNKAIWYDNFGNRDTMDVNVDTLRWTTDRYSEVDSLGYFYNTLTPTKMMQNKGSGSFMKLYWSIENTLIDSQEIFLMD