Scaffold Ga0211579_10000032

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10000032
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101106
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (65.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022752	Metagenome / Metatranscriptome	213	Y
F025055	Metagenome	203	Y
F043609	Metagenome / Metatranscriptome	156	N
F057442	Metagenome	136	Y
F069319	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000003223	F057442	AGGA	MNNNIEYCLNCGHESHCGENCYQDYGESEKTLCCVNCRCPNDKKSGHLDEDSFNGA
Ga0211579_1000003248	F025055	GAG	MIEKLIKTDGKRYIKKTFDYKGEDNFAFLKNEVFWLNYLKSKWVPELYEVGNNYIITRYYGPDLNTLRNNKFKLADDLADQTLEMYKFFKEKNVFKLNGALSNLTMNGNQLVAFDWKWARFRTDKYIDYEVISYEKWLSKIDSELVEKLKCMI
Ga0211579_1000003253	F043609	GGA	MRTDNQEFHNILKSVDFADISDFWSVPYKEILEEVKDIPENKWRKPFDADYKREGLNDLESNIYYPGSKGDLIPARGWRSVTALNETGDYRDQISKFTPVFNTENEYRNKVKEVKENSQWTNISHYLPTLKKFFEDKIFPYMYVGHIYVSALDAGGIVTEHNDIPDDSRPMLESDRVHSFNVLNTFNMVLNHVKSCYSCFNGKILPAYDGAIRWTNTGNQHWVVNMNKESQYQIIWQGLYKKSFRKLVKEKYKYSYGNNR
Ga0211579_1000003256	F069319	N/A	MLNNYTFTPTELPKKYRIQIDNIFKDVVDSKTDPYWKNYTDKEFNIDEQTAISVSCDGDDVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLDQQIDFIEKLNPKFYFISRQRTNTRWLKYYFDNFNKDYDRNMIVSNHQYWVCGGKKDNCLQTIIYPKDLKVPLKAYK
Ga0211579_1000003268	F022752	GGA	MATLSNLLGGGGGGTIDHRKEGLPLFGVWGDDGGGNSNVNYRIFDSGYKNVGSPWGSVCNSTTNYRFGILGDASHAYSQDDHGTDVSHSDLTSQQYDSWTNWIKSMYQCDQYPHAQYYTSSKDGFISFHSYHHITSSFEFQTGWTKLNMVLPEGIRPRRMFCNRRRTLREMNMGNNTCANIDAYTYTSHMLNTDNTYASGTGYNESTKMLVMVHSGDESSNTSKTIHVFKSSQCLNKVNRIKDYFDNLTATEYFTGTWTTDNNRDMTVAVGNNGWVGFGHKNGNSMRYAAFNCNTGLGLGTSDSGRIFDSWQDFSGSTTTSYGANQGSMYYTKFNTTWDGTWGMIYGPYYYYGVGLCAFCMNLENPRKFIQVNETKSSRSNPWFAWGRTGFHGGWSDNTDGDTMRVYSWSFDPTDSDHTTTTKVYRGSTSGDGVVRDDDAHQGDEAVTNKTGNVGLGANRCFLHGGYHSTCYPAMMQIDWWGNFGNTDSCYGGNGFNTSA