NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10175355

Scaffold Ga0211614_10175355


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10175355 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F103094Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211614_101753551F006217AGGAMIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAERKLEVERLRQFLKDNPHYRYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKKGKC
Ga0211614_101753552F103094AGGAGMKSEKLNIEVSLSSEHSCYVSVKDYMIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH
Ga0211614_101753553F005813N/ANSNGVWAGTQADARKYCGKVYSTVDVPTDKPSLLKFLNLNQVGSLASSPTLEEVRTGEPTTSAMAWFRWSYDCMCRGEYDDAKEHLAKALTMSKKESADEE
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