NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10111749

Scaffold Ga0211614_10111749


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10111749 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1163
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F039829Metagenome / Metatranscriptome163Y
F049689Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_101117492F039829AGAAGMSLKVKDVIRELKKFPDDYKVSLETYEEDNDNGGGYKKTNCISVEKDDDAEKFVVIR
Ga0211614_101117493F049689N/AMFGRKANNMNDLYFVIRVWNFSHDNTTQYNIVSDKAYDMSKAMNIKIAQDIMESNPNISYQLQKVSLVNVGKSKIAS
Ga0211614_101117494F002330N/AMLKYINQINKQLKIGDEFTIYYAPTYTKDGQDQTDVYKPYQYEVNSRLAKWDENCKINKTGSLTYFDVEKDSYRTAIQTLQPIRIYINKQMYVWKEGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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