NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10050228

Scaffold Ga0211614_10050228


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10050228 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1742
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008851Metagenome / Metatranscriptome327Y
F026125Metagenome / Metatranscriptome199N
F051473Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_100502281F051473GAGLDKFISIGDDRFYILGRVSVDCGYSIDELKTMWGLADTILRNEEDYYVCMKLIEVNLEIQ
Ga0211614_100502283F008851N/AMDNRYKVIVDYSSTEGTLYKGELLKEDKNNTLDGHKRLKDSMGRVWFVPFKYIEKI
Ga0211614_100502285F026125AGGAGMFNYINSWKSRKTEKWNIEIRLGRITLLQLNYDAKKSKFRFMILNLGLEIGGK

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