NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10027403

Scaffold Ga0211614_10027403


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10027403 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2365
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F039872Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_100274032F039872AGGMSTNISGLIDRVYREYLEPMDDVNSYTTLAAGVNNSITTITFAGELLTQEEKDAMDAGTIIECDKELMRCVSLDTVNNSVVVVRGVRGTDAAEHLEGAVIKIAPPFPRQVVFDAVKDQINNLFPTLFAVETQSLTTGTGYTLIGSYDSPGTHNYIVSILSAISQYTDFSVGADTTGVNFAPVTSSLVELPNPFTYTDSDGTSRTITYSSGPSVVHAIQFSGISSGHTAHVTFKKKFIEPTAETDTLATIGLETEYEPIIMAGVAAQLMAGRDIPAATADYITDQMAVASFPVNSANSIRNSLLQYQQLLINQARKYLRAKYPEAVSVDGMVYGIQA
Ga0211614_100274034F003693AGGAMIQSKLALIDVSADNNDSLGVEAEGMLLCGIQFPAAMTGTAITFDFSLDNSTWVDVKETDGTEVSYTVSAGDVVRVDPSGWAFASNGYLRVSSNGTEAADRKIILHFRHS
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