NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10019792

Scaffold Ga0211614_10019792


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10019792 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2792
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F002093Metagenome / Metatranscriptome594Y
F016994Metagenome / Metatranscriptome243N
F022908Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_100197923F022908N/AMPTHLEEAIKIILGPDSKLRDKTPRIYALPKDEHMPKGFTNLKRMRFLNHDVSAGRNIKRWLWRDYNPEIILQQPPFDKYEDQSEIFTLIRNPQERWWSGIKDMFYFMPWYSWWTNEKIMEQWPHFTRSTFRLHDVMEEVKPQHLIKCDNGLNDRIINFAKKNGLLCFGNIPYEKALRHTKPDIKKLEDKGVQTLKAWLRKNPNRQQQLDEYLEPDWQYWSKVEYQE
Ga0211614_100197924F001656AGGAGMAQTPNRSTNMIRRQSFNGKGLTFIEVIFAQSITDSATTPESKDSVFDKVTKVVNRHGNLLACSYRLAAKATDNDAAEVSEITANNSIDSFQYIVEGTPGQFNANDSVGDTNIDVTATIVADAEADVEADIRAVLDSDSSNNTQHVKMRTLLPEGHNNGDANTFVGMFDQRGDA
Ga0211614_100197925F002093AGGAGMAYDATIPAGGPGNFVSPNTAHEADGTEVDFITVDYIVAMNGEVTYSGASANTAGLQLAMETIQNQGVNILGKGVLSNSNTEQTYMVRRASLDTISSTTTVAAIQAAIRAIDALTPDKITADVSGATCADRDMGDTSVGA
Ga0211614_100197926F016994N/AEFITIDAGEELANHQLKNETQNAIENTVRQYGNIVGAGPLFDTNASRTYIVEGTDMFVGSPATSGTGAFTFTESGADGSSVGTLVTALKALGTIDSIDLNDSGTTAKRENLEL
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