Scaffold Ga0211614_10001182

Overview

Basic Information

• Taxon OID: 3300020471
• Scaffold ID: Ga0211614_10001182
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11632
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (97.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088735	Metagenome	109	N
F093706	Metagenome	106	Y
F100929	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211614_1000118214	F088735	AGGAG	MNIFQDPDFYYNDLTHLITNEIIKQIEAGVSSITGFARWQYPIFIDTDDGFIDWGFDVQYVDNVPGRTFDVWASAGFNEDYIPEVTFTIVLPRGTSLQDAVIDYPELFGSVAHELHHIAQKNEGICEYEGETDNDQVRYYLNPTEIPAFHIGFRAQCALSGADMEAEMRSYLSLQNINSEETELIVEAWMNPSFEIAEENLLS
Ga0211614_1000118217	F093706	AGGAG	MYPKAKYVNIFEAKFVRPNKTGSAGATYATEGDDIITIRLDSIASIHTESIQYSHHKYCMVVLSNGSRYNITETTADEIRLCLDIDDIYKRGEE
Ga0211614_1000118218	F100929	AGGAG	MNYTYRDLLEALQAMSSDELDMSVTVYDRGQEAYHKLNYAGKCEGDDKVNADQPILIINDPEETVSECPPLGAFPTSDVIKQDYLETGLGYPDVRACEIWMEFADGSTLTTDDFLDMDECIETQIRDNFCPENVGGAKIVNFKWKELGI