Scaffold Ga0211614_10000546

Overview

Basic Information

• Taxon OID: 3300020471
• Scaffold ID: Ga0211614_10000546
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16490
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (88.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F018267	Metagenome	236	Y
F054844	Metagenome	139	Y
F074152	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211614_100005462	F008590	GGAGG	VKVGDLVTYYFQLPRWSKGESDLCSVGIVVETGKYTGNCDVKVLWNGTTEPSTQASQHLALVNNIRLTSS
Ga0211614_1000054620	F054844	GGAGG	MRLETGTLVRWRGSIGLVTGPCKKRWAKDDDVWVMWNDEPKPKIESSRLLVVLNESR
Ga0211614_1000054630	F018267	GAGG	MRVGDLIAFKPKSFGDDDWSNPCIVLDCFINDDRRGGGFRDTIWVVWCDGGKYMVNERNDEVVYLTSASHLKG
Ga0211614_1000054645	F074152	GAG	MKLLTTFVLIGTVDSKDDFFATVEINMNPQTEQVGHAVMPIHSFPCAIDEGDIFYILKLTEESVPVIICKVDQGDEKTNVGEQ