Scaffold Ga0211614

Basic Information
Taxon OID	3300020471 Open in IMG/M
Scaffold ID	Ga0211614_10000085 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020471 Open in IMG/M

Scaffold ID

Ga0211614_10000085 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35891
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (75.56%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35891

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (75.56%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_052
Coordinates	Lat. (^o)	-16.9675	Long. (^o)	53.9199	Alt. (m)	Depth (m)	75
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_052

Coordinates

Lat. (^o)

-16.9675

Long. (^o)

53.9199

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F022423	Metagenome / Metatranscriptome	214	Y
F025614	Metagenome / Metatranscriptome	201	Y
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211614_100000851	F025614	GGAG	LSGNKPFDVNRVNIFTHPKYMKVWAQQFNKACGSDTFKVQPDMGKLRFLMDKFVTDYNYHLEQLEGEEE
Ga0211614_1000008530	F077364	AGGAG	MAFDTLGRPTNKSVDNVNIFKLRPGQIVESDVYLDPGDYINPGQDANGNPGIAKQYTGETANNMAKPEDSGRSIAEGTTLAQSLYNFLPDEVIDEFAKAWVKSGDPDVAIGTTRQTKAWKDNFGKLMRDDGTLVMDEMTFLSTKASYKQTLAEVGINDFSDFEDEFEDMATGFDTNDPVSAEEFQARIDMVYGGVKDQIPEVEKLFRERFNINLDAPTIFGALINPKIQDKVLAGEIATLQLQAEASSRGFTTTFGRFQELRNLGLTQEQAKGVYSSASSFISQASSVGRDLDISTLEDAALGDTSAQQRLQRIQAEVQSSGGLALGAAKKGDEVIGLTAD
Ga0211614_1000008533	F003196	AGG	MQLQKEVLIDISDNATTSSAAQCDGLLLSGIVFPAAMTGATITFDFSFDGTNFVDVVETDGTEVSYSVSAGNVVRVDPSGWAFASTGFLRVVSASSEAADRTINLIFKQS
Ga0211614_100000855	F022423	N/A	MQDVNFIASTIHAMTEGIQNKETLQRIIGTANEYARTMKYPMSKTDWTDEQVSKYFAMIERLVDMPVEYTQEQFDELSLEDKLKAAGLEATDKTDGLQQPGGLIGEVVKDMEQQNKYRDDLKCPYCQAMVYDNRNSKKSDKSPDFTCSTNDPVQCGGHTGKWRKSWWLDNSDIPKEWNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211614_10000085

Overview

Ecosystem & Geography

Associated Families

Sequences