NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211543_10169060

Scaffold Ga0211543_10169060


Overview

Basic Information
Taxon OID3300020470 Open in IMG/M
Scaffold IDGa0211543_10169060 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F013644Metagenome / Metatranscriptome269Y
F071273Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211543_101690601F013644AGGAGMPITQNRSTNLTRRQSFNGKGLTFIEVIFAQSITDSATTPESLDSVFDKVTKVVNKNGTLLAQSYRLAAKATANDAAEASEITANNSIDSFQYVVEGTPGQFNAADSAGDTNIDVTATVVADAEADLEADIRAV
Ga0211543_101690602F002093AGGAGMAYDGTLPAGGPGNFVTPNLAHEGEGVRVDFITVDYINDVSGEITHSTASANTAGLKLAIEAIQNQGVNVLGMGALGNSDTEQTYMVRADALDTISSTTTVQAIQAAIRGLDALTPDKVTADISTATAADRDMSDTQVA
Ga0211543_101690603F071273N/AAAGAVYDTGTKQDFLLEGDFTSTLNDFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVACTIKTTFKYA

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