Scaffold Ga0211543_10139170

Overview

Basic Information

• Taxon OID: 3300020470
• Scaffold ID: Ga0211543_10139170
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1223
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002507	Metagenome	553	Y
F032820	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_101391701	F002507	N/A	EMTYYLLLKGDTEKDVMFETNVLGEDSFGVFYPAMGFNVLHKIINKKPELIEDIKILDDHKKSYTITDFLDIVEKLRIKKA
Ga0211543_101391703	F032820	AGGAG	MKYVLVNSANEIEDTIDSVTLGGAEHYFMKRKKMTDEGKFYSVWKIKTKKEYDLNNEAFMRKASSEWWNYEEKYIDIDKP