Scaffold Ga0211543_10088371

Overview

Basic Information

• Taxon OID: 3300020470
• Scaffold ID: Ga0211543_10088371
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1592
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F063682	Metagenome	129	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_100883712	F105878	AGCAGG	VKVGQIIKLNTDGLKSFPPGIRQRLEGQVGLVVQQKYDLSYKLDQSKLPEHIKVYPSLVKFESLADLSGVFEDTVMVFPDQAEVLS
Ga0211543_100883713	F063682	GGAGG	VKPGDLVRIRKTAIDHYSTNWFIWHAEKKIPLLIIEELNKSYMKVLKPDGDTVHIHRNHLTTRLY
Ga0211543_100883714	F015346	GAGG	MEHKLYKVGDLVAVASNRVLGIITKSNYWALDEYLGGEIEMVDVMFGSSVSRQYPVRYLVDL
Ga0211543_100883716	F006383	GGAGG	MLDSSNKMWQVQQPGTILRARHSARRGQLALVLARSYAGPRPSNGYPPRRYVKMQWITSGERFEEMLVNAHNCFDIVSSCDKLVAEETE