Scaffold Ga0211543_10034239

Overview

Basic Information

• Taxon OID: 3300020470
• Scaffold ID: Ga0211543_10034239
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2751
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F019158	Metagenome	231	Y
F030886	Metagenome	184	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_100342394	F030886	AGGAG	MSYHGRPPPDYNYKGISVVNPLIRIEQKLKRVQEVLDNISDASALTALDLKLKIEKVLADEDVK
Ga0211543_100342395	F019158	GGA	MKMTIVIDSEDREGIDAALKVARLMHEKYVTGGTSQKESFGKIEFIKMLRKFMRESINHLNDEDSNQVKDMDDLANLRNAKRFADRMFRGER
Ga0211543_100342396	F004771	AGG	MKKRIRIGDLVTMYTHDTGLIGLVLDRKPKAISTTPAQICIKWFNGGGSVEWEPEGWLEVVSARG
Ga0211543_100342397	F105146	GGAGG	VRVGDLVRSRYAVGRIARARIGIVMQLREGAYVDQPLAQVCWTRKGVTGWVEAKDMEVINESR