Scaffold Ga0211543_10014223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211543_10014223

Scaffold Ga0211543_10014223

Overview

Basic Information
Taxon OID	3300020470 Open in IMG/M
Scaffold ID	Ga0211543_10014223 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4586
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5375	Long. (^o)	70.0244	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061910	Metagenome	131	Y
F095602	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_100142233	F095602	GGAGG	MMDVLVQEFANVGLTILCVVVGVIIVNWLDRNVFNKRRKND
Ga0211543_100142235	F061910	GGAGG	MANDITQGYQPLPQDKWGCDIKPTEEPDKDCICCWGDGEVQCSFGDSYYYDTCYCVLVKYWKNIGNKFMADGCEKLLANVIRLKTI

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