Scaffold Ga0211543_10003078

Overview

Basic Information

• Taxon OID: 3300020470
• Scaffold ID: Ga0211543_10003078
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10719
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F057352	Metagenome	136	Y
F070089	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_1000307818	F057352	AGGAG	MKLWVLHGTYEAELFTSIHLTEKGCALAAVADVLEFLGVDSKEDALAVMNDCYAYTETDGEQTEPFEWDQEKMKNMSSKELWKIFSDWTEISWDRMSDRSYYIDATPQMVQA
Ga0211543_1000307819	F010950	N/A	MMKIWVVRQTCLYDHETYVSSHLTEKGALITAISQVRSDVVDGFDEDEIDDYRPGLPHNPEEDLMQYSSEQLRGIVQDWWEYSWDVNEQAQYQIYETQVEA
Ga0211543_1000307822	F070089	GAGG	VKVGDLVKWESELVDDMDRQAVEYGLIIQLSKTGHNTTSAQVLFNDGEPWWVDTSRLVVINESG