NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10445074

Scaffold Ga0211577_10445074


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10445074 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029713Metagenome187Y
F033766Metagenome176Y
F036656Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_104450741F029713N/AMSDDKYDYEAELKAAKRAEIERLYFEMELTNEQLLAEYKALDIKEEDSL
Ga0211577_104450742F036656GAGGMKVKNFSNIPIEFLIGSCITLSDEDEGRYIKDVCVDLEKHSIILIDDNGNGMYFESLRNASIQFQGGR
Ga0211577_104450744F033766AGGMSDYPYNLTAIATHLRELTKSIAKKLDISEDDAWDLCMEKLESKF

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