Scaffold Ga0211577_10193596

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10193596
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030088	Metagenome	186	Y
F033798	Metagenome	176	Y
F050375	Metagenome / Metatranscriptome	145	N
F078428	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_101935961	F030088	N/A	DMSRTLITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATRKFDKDLDVLVHPKRGRLFMVPKNVEQFITVV
Ga0211577_101935962	F033798	N/A	MNYYELRDPSRFASVMDRMMNDEPMKWQGWMMDMDTNKLSLEAFRKWLSAEWYEKELLRDDFPELAFLDDDMLVMDMQHELLAGLN
Ga0211577_101935963	F050375	AGCAG	LKIHSYIYGMEKLINKHGTIGPYDCEGNQVEMDWKWIDDEMEATITEMRFDGVKVKINNVAEWIVDSLFQDVPYDELMEA
Ga0211577_101935966	F078428	AGGA	MLEKKIDTDHIVTCVECGNDDTAKLMIIRDAPWVVECMECGHPNDRTWGRMDDDTFYDMLLDVVM