NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10193596

Scaffold Ga0211577_10193596


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10193596 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1343
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030088Metagenome186Y
F033798Metagenome176Y
F050375Metagenome / Metatranscriptome145N
F078428Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_101935961F030088N/ADMSRTLITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATRKFDKDLDVLVHPKRGRLFMVPKNVEQFITVV
Ga0211577_101935962F033798N/AMNYYELRDPSRFASVMDRMMNDEPMKWQGWMMDMDTNKLSLEAFRKWLSAEWYEKELLRDDFPELAFLDDDMLVMDMQHELLAGLN
Ga0211577_101935963F050375AGCAGLKIHSYIYGMEKLINKHGTIGPYDCEGNQVEMDWKWIDDEMEATITEMRFDGVKVKINNVAEWIVDSLFQDVPYDELMEA
Ga0211577_101935966F078428AGGAMLEKKIDTDHIVTCVECGNDDTAKLMIIRDAPWVVECMECGHPNDRTWGRMDDDTFYDMLLDVVM

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