Basic Information | |
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Taxon OID | 3300020469 Open in IMG/M |
Scaffold ID | Ga0211577_10193596 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1343 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_133 | |||||||
Coordinates | Lat. (o) | 35.4068 | Long. (o) | -127.7432 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F030088 | Metagenome | 186 | Y |
F033798 | Metagenome | 176 | Y |
F050375 | Metagenome / Metatranscriptome | 145 | N |
F078428 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211577_101935961 | F030088 | N/A | DMSRTLITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATRKFDKDLDVLVHPKRGRLFMVPKNVEQFITVV |
Ga0211577_101935962 | F033798 | N/A | MNYYELRDPSRFASVMDRMMNDEPMKWQGWMMDMDTNKLSLEAFRKWLSAEWYEKELLRDDFPELAFLDDDMLVMDMQHELLAGLN |
Ga0211577_101935963 | F050375 | AGCAG | LKIHSYIYGMEKLINKHGTIGPYDCEGNQVEMDWKWIDDEMEATITEMRFDGVKVKINNVAEWIVDSLFQDVPYDELMEA |
Ga0211577_101935966 | F078428 | AGGA | MLEKKIDTDHIVTCVECGNDDTAKLMIIRDAPWVVECMECGHPNDRTWGRMDDDTFYDMLLDVVM |
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