Scaffold Ga0211577_10134770

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10134770
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1678
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001660	Metagenome / Metatranscriptome	655	Y
F018287	Metagenome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_101347703	F018287	AGGAG	MSYHVLDERLMEEELNSKVFKTDPIKKILDPNRNRTDRFNNNYLMELKCRYHSVDLIKSWGGATIEKDKYYALTQSCGDKIPGYVNKFPCGSYYAWNLKKIKEPTWYEKMMPGTTNWDKTPRLKVVGDLKFEDGTKLI
Ga0211577_101347707	F001660	N/A	KQERKQMADPAKYKSLSVPKTDWEQLGVLANKTNRTRSKMIGRLIRFFMDNKGGKSNGKANKGS