Scaffold Ga0211577_10111422

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10111422
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1884
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004850	Metagenome / Metatranscriptome	421	Y
F023317	Metagenome / Metatranscriptome	210	Y
F034346	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_101114221	F001740	N/A	MYNPNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNYPGEANGVFMTLSKNQQDDVYDILNQIL
Ga0211577_101114222	F023317	N/A	MNNKNTTIDKVAMSEFDMHYYQLGDNEKQWCHDEMLNNKKWLAPFWKQPGYQSETDKLCEELGIFNYKTNKQ
Ga0211577_101114223	F004850	N/A	MIDNYEFEIYYGEIEEPLYLTNDKNYICDEMRDFMEELGIVMDEVIYKVELITN
Ga0211577_101114225	F034346	N/A	MIKAIKIIAIKAVEEKMLKIYATIMTTIFLAIWVPTMAIVLKDIFMQVILPIFK