Scaffold Ga0211577_10095777

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10095777
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F011578	Metagenome	289	N
F037261	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100957775	F001479	AGGAG	MPKEMLFLCDVYTKWLEENELPHRCASELLYGKDTMNKLRINQVYWLENFISTWDIISQH
Ga0211577_100957776	F037261	N/A	MKKWILTDTFDFYSKDANYWNFTDFDEAKRIGESLVSTIGIVYLWKGTNGNPIKWMKFN
Ga0211577_100957777	F011578	N/A	FFTGVAVAVPTALMTMKLLNSSLFISHQELSESNQKLSLIINNLDDFREERMKDKMERLGITDKLDPRLSTHIK