Scaffold Ga0211577_10091790

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10091790
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2120
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100917902	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRPFFKGPLSIDSVREFDARYKKGWADKFEKGNIDINKYLNSLS
Ga0211577_100917903	F008190	AGGA	MEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQTYVESLSDKPITYKIYHSPDITVNGTAELFDDIIEFE
Ga0211577_100917904	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLEIGSKFDKTVLDINTQWGTHYEPTGEDIEFKIKRLKSEIKELEEWKKNI