Scaffold Ga0211577_10054090

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10054090
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033251	Metagenome	178	N
F067196	Metagenome	126	N
F069345	Metagenome / Metatranscriptome	124	N
F082525	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100540903	F067196	GAGG	MPKFNNIEEKQKFFRNAIKKLDTGLPEEASPDLIKFFVIHVITAYDHDDCWDDIKGFVDFALKEKSQFDSARQAVEDADNLLDAITNSKDK
Ga0211577_100540906	F033251	GGA	VRTVLVLVRLKPIRRMNVMADKKKRNLTSTKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKMSKIRLGVEAANNPVEDLTPFQKNLDETLFGGVSPDDKPRKPRKPRATKLSLTPKPLVTDTFNVPKKPVYAAVVLVLVIVAWYLGSMS
Ga0211577_100540907	F069345	GAGG	MVWLMNLFAFGVCQMMIDCPECSHSDRKGEVEHEQFEMTSYGVYEPFGVWKTCENCSGSGEIEAD
Ga0211577_100540908	F082525	GAGG	MEYKINSGVPIPDVVSGKKRGRGKWQVLLSSMSDGDCVDIPSGSYNSIYVAASRLGITLMSRREADGLADEFVRIWRVSDDD