Scaffold Ga0211577_10030451

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10030451
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4104
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007945	Metagenome	342	Y
F031151	Metagenome	183	Y
F065673	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100304515	F007945	GGAG	MMSLIKGYNTVFQCIGDAYVKKDIQRFYYGYQLCIRAKTNMKSLHKYLINRYNFNREQCFKMLKLARKK
Ga0211577_100304517	F031151	GGA	MIKHFEKFNDCGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPSGASAERGSSVESGLNMVLNGMSVKEASEKMIAEYDANCLRITDPKIDDERANLVPLLELGASTFQQYAFRWDLLNYQKKVELEISGIPFIGYTDFHFEDKNTKEDFFIDLKTSKNLPLQISISHAMQQAIYQRATNTKQILWYLKTPTKTKGAEYRAMTLDDYSRPMKICEHILKVMANYLKKVNNADDVRDSLIPNPDNWIWKEENVLKARKEVWGY
Ga0211577_100304518	F065673	AGGAGG	MSDKLITDEDIADIDRVKEQAIAKHMSDIKVMSKLVLSLNEYIIRFGRTSNIHDQCFDLKAQVIKNRDHLQEWINQI