Scaffold Ga0211577_10020153

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10020153
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5250
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062790	Metagenome / Metatranscriptome	130	N
F068926	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100201532	F062790	GGAGG	MYHKISSMCDKVRVIYEKSEHLRIAKYGHKDDVTERQSDNDIDMMIKDIQQLCREIANDKGKYNRYPAKKNA
Ga0211577_100201538	F068926	AGGAG	LSKDKDNIIPFPGMKKFDNSVDEDSIDKANKELLLQKEEVEMIEHTIDEVAIDVIRHLVDIGCDIHKKHFYGDLALVTEILRGMIMRDFDKEHLAQSLIDKIITLEHNARGEVQPIINYSKVLEAKDLPQHKLDFGDDNETEIVFEPDFEFPEPEDDK