Scaffold Ga0211577

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10011085 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020469 Open in IMG/M

Scaffold ID

Ga0211577_10011085 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7430
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7430

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4068

Long. (^o)

-127.7432

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F019561	Metagenome	229	Y
F024420	Metagenome	206	N
F031295	Metagenome	183	N
F050005	Metagenome	146	Y
F051867	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1001108512	F019561	AGGAGG	MTDKFTKPILQNLRTSLQDILRAESKSDKIPFELTLGNCSFSEDQAKFQLIVTFKGNSVQDIARKRQKEDLEYYAKYFDIDLDKKHPRYTLIGYKAKSRKLPWIITDNQRKGEFIISDDQAKNLFGKQDVNEFLDRQREAQANG
Ga0211577_1001108516	F031295	AGGA	MVRAEEKLFNVISALTDEYNNYPHKRLKKSEVQDLVHDLEIVDAELHDLKLPPITDDIQLDNRVCMFYVINQLKDMVTENDDTQKIIKLTEFYNQLVFNLGINALHNHKNEWEDR
Ga0211577_1001108517	F010277	AGGAGG	MSRALKDKLEEVELFVGEQLQDYTNEQVIQKVRKEFGLQMYVDHAEELLLEFQQEVNMERMQSW
Ga0211577_1001108519	F024420	GGAGG	MTIYEELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFREYFEEEHNIELYDAMTFKEILILCRDHNVGGRFR
Ga0211577_100110852	F051867	N/A	MFKAMLLVCSLVHGSGDEMKCFELHDMEAPNGYTTEKECMGRIHEMVDLTRSIVPFPYQVKYKCSKTMERTHNEIRNEEVG
Ga0211577_1001108520	F050005	AGGAGG	MINKKTSYPLFHEFKIMKIGNILFNTNVDDIIDQEIEETKILIDQVKDINQFLEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211577_10011085

Overview

Ecosystem & Geography

Associated Families

Sequences