Scaffold Ga0211577_10009359

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10009359
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8152
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008346	Metagenome	335	Y
F013639	Metagenome / Metatranscriptome	269	Y
F101490	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000935912	F101490	GAG	MTKPVKTYLQETLTKQLKDFRDYESCIENEWGGKKRLFKCVDVKLEIKFCRAQMLFDESLIESPVKKKIEMIEMMYRAYNALINKAEENGYSKLENDYRCYKYKNNKIAIVCDYDLQLSNLKSIYGKDKDVVLFSVEELFRLMHPDYLEAKETFKKKNLDIQFKRVSFT
Ga0211577_1000935915	F008346	GGAGG	MPMKLKASQKIRDRATGKTTTEHYYLKSMTLQELNDYIESSSAKKKVIQKCKNEITKRRNKNGKFR
Ga0211577_1000935917	F013639	N/A	MKINKDKLKEQIKQGKSSHDIAMSYDVHPSTVRRKAKELGLKFVNISWWRNK