NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10005465

Scaffold Ga0211577_10005465


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10005465 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11013
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F019909Metagenome / Metatranscriptome227Y
F020115Metagenome / Metatranscriptome226Y
F024111Metagenome / Metatranscriptome207Y
F048249Metagenome148N
F055727Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_1000546514F019909N/AMTKFEQHIGKQLPQDVLDYMASRTIEQIERQAQKLKFDSWCPVVMENDSPELREDLKQASDILFQWIDFQSVTK
Ga0211577_1000546515F009699N/AMITEDLNLQEMMTDKEAQAFMQKVDSSAPFWVELHDEDAPTMQIQGRAVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKTYFGLKGGKQKIADAINAIHSELIGRFKEQNDEKTTD
Ga0211577_1000546517F020115N/AMMTYEQFENIRQWADRVANTANDTDTNIRSLDLVHDIAGILANDDHFIPRL
Ga0211577_1000546519F048249N/AMIRTGSKVLYRGSWGRDGQKIAEVIAIEQTQGPNEKYGDEVDAVSLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK
Ga0211577_1000546523F055727N/AMHNHFLEFSVDEMVDAYTYFTSIHDYEGCRLVGEAFAQNTSMDFQNF
Ga0211577_1000546524F024111N/AMSQPIFAFVFPFGEHGGEFRCKRNFVDAECAANWAVDIILKEGDDYCYFKEVESADYVFEPACESHTVVRWADDDPTWEMYDVIDDFDEAMEIYPIG

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