Scaffold Ga0211577

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10005465 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020469 Open in IMG/M

Scaffold ID

Ga0211577_10005465 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11013
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (14.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11013

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (14.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4068

Long. (^o)

-127.7432

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F019909	Metagenome / Metatranscriptome	227	Y
F020115	Metagenome / Metatranscriptome	226	Y
F024111	Metagenome / Metatranscriptome	207	Y
F048249	Metagenome	148	N
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000546514	F019909	N/A	MTKFEQHIGKQLPQDVLDYMASRTIEQIERQAQKLKFDSWCPVVMENDSPELREDLKQASDILFQWIDFQSVTK
Ga0211577_1000546515	F009699	N/A	MITEDLNLQEMMTDKEAQAFMQKVDSSAPFWVELHDEDAPTMQIQGRAVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKTYFGLKGGKQKIADAINAIHSELIGRFKEQNDEKTTD
Ga0211577_1000546517	F020115	N/A	MMTYEQFENIRQWADRVANTANDTDTNIRSLDLVHDIAGILANDDHFIPRL
Ga0211577_1000546519	F048249	N/A	MIRTGSKVLYRGSWGRDGQKIAEVIAIEQTQGPNEKYGDEVDAVSLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK
Ga0211577_1000546523	F055727	N/A	MHNHFLEFSVDEMVDAYTYFTSIHDYEGCRLVGEAFAQNTSMDFQNF
Ga0211577_1000546524	F024111	N/A	MSQPIFAFVFPFGEHGGEFRCKRNFVDAECAANWAVDIILKEGDDYCYFKEVESADYVFEPACESHTVVRWADDDPTWEMYDVIDDFDEAMEIYPIG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211577_10005465

Overview

Ecosystem & Geography

Associated Families

Sequences