Scaffold Ga0211577_10005298

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10005298
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11209
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (96.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008887	Metagenome / Metatranscriptome	326	Y
F011192	Metagenome / Metatranscriptome	294	Y
F016204	Metagenome	249	Y
F056531	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000529811	F011192	AGGAGG	MTAKEMTDNNFINFQDDFYNLLEKYGVGKIDIEHPQFNSICNLRNSVVEFIEQELFEEEYYRETDGTTAEEV
Ga0211577_1000529822	F008887	GAGG	MDRGCCNECGYKADYIIDNNNYADNGYKDLNQVPTDKMLCGVCYEEVSDEV
Ga0211577_1000529823	F016204	AGGAGG	MSVKEQYVNVLDIKFYVCDEDGNEVLNKDGTIKEFYFEGRLKPLEYLCEDMTVEDLEEVSNG
Ga0211577_1000529824	F056531	GGAGG	MKTISRFTEHYLDKTKVRKGDFDWDLYNMKEELTNEQEALRQLNGLIESIATGNNTYKLDTFKSDVEEVLEEVSDVS