Scaffold Ga0211577_10001734

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211577_10001734

Scaffold Ga0211577_10001734

Overview

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10001734 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20771
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016674	Metagenome	245	Y
F067842	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100017342	F067842	AGGAGG	MNEYQTCIYTQDRLTKSITLSVVEHGFSEKNSVDNAYDTFKCLALDANEILKIETKGL
Ga0211577_1000173434	F016674	N/A	MSKKSNVINFKKEKLKKFDEENEIVFTVDDENYTLGEMVHQAHNDNGVEFVFKLDLEDDEETIH

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