Scaffold Ga0211577

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10000903 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020469 Open in IMG/M

Scaffold ID

Ga0211577_10000903 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29343
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (81.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29343

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (81.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4068

Long. (^o)

-127.7432

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F039881	Metagenome	163	N
F047994	Metagenome	149	Y
F061371	Metagenome	132	Y
F063188	Metagenome	130	N
F069048	Metagenome	124	Y
F080140	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000090312	F047994	AGGAG	MSHQMNDKIVDCINDEWSDMTVDLKDWLKTHRKTDEVADRVYIGLTYLENKWKQERFDSYPDS
Ga0211577_1000090315	F069048	GGA	MQIGDRIKVIDQEIYGKIIVDHGKEIVIEDEDAETNDNQLCFKKSEVEITNELA
Ga0211577_1000090317	F063188	AGGA	MEKKQTKTSVQQRSDGMWIVDAKLSAVRIGLQDKEFVKRGHNTDYRLWITCFVAKTKNACVDWLRDNMAMLDKRSQKYSVNVRQHKESTN
Ga0211577_1000090318	F039881	GGAG	MTRPNKLFKDTTSYNLTIEKKDYEELKKYSTKESDTFNMQVSIADLIRTSVKLYLEDLHKAYGKETNKDKCATEK
Ga0211577_100009033	F002077	GAG	MNLLPKQKSKEREISPQQEQFLEVLFENGGNVTDAALKAGYARGSVTWLRTSLADEIIRRTQSILSMNAFKAATRLVTTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKDVTIDGN
Ga0211577_1000090331	F080140	GAG	MKSKTKTKLFSLEMYLNKEGNVEMNYEAVTPDDLERELNTGLPMYSGTSQVASLLRYLRKSADDIMSGSRNYI
Ga0211577_100009038	F061371	AGGA	MKTLTDIDTQIDAIKEVSSNALTKHGFSRSRQRIFDLSNELSNSWTNYKIIHGKTYYKELTLFVVTRSAKGLRYRSIIKRSGLHPVTVHDCLSQLIQDGLVLKKINNDRLIYRAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211577_10000903

Overview

Ecosystem & Geography

Associated Families

Sequences