Scaffold Ga0211577_10000894

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10000894
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29430
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (74.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019653	Metagenome / Metatranscriptome	228	Y
F040079	Metagenome / Metatranscriptome	162	Y
F045675	Metagenome / Metatranscriptome	152	Y
F055647	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000089423	F040079	AGGAG	MFEVGMGIIRQYRDYTAKGEITSIHDDADGETLISVMYDDGAVKTYTENCVEQNLGRRMIVTEEVIW
Ga0211577_1000089446	F055647	N/A	MFIVRKKDGEIIAIASRQEDAIGMADAAKVDKEDYIVQESTDSVELREIYRSYYKTRS
Ga0211577_100008945	F045675	AGGA	MKKILLALGFVTACAPAHADIIQINVPCDPAPEVMRIMLQYKNALLLQGTGTIASKDGKNFTSGAQIFLNQDTGTLAFVLSFPNGDGPMMSCLIVAGAEWEPYGGPQPWDEKKEDL
Ga0211577_1000089455	F019653	GAGG	MTALVANYVFSPLSGLWSSLDRYTQMVGYSRAAVELARMGMIEESKRCMMEIGKLQNDR