NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10000860

Scaffold Ga0211577_10000860


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10000860 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30131
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F094536Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_1000086018F001942GAGMKKSSEDHQNNSRLGALGELLVQAFLIQYCDFVYPTQDKHKADIMCELSNAKYTVQVKSRRETKEGKYVFAAEPSRSMSSVYKNYHVDILAFVFFGKQHKRIFFKANTSTQNYYTFQNNNITDTMELDSFQECLNQLNQIPVLNPLFK
Ga0211577_100008603F094536N/AMRITLKTNHKQIRRQLDKNLGKKKFNKILSEAMNHTGERVVNAERSHLHDKLDRPRPQTVKSVVISQFAKPNAMAMVVRVKDWAAEYLHYIYSGESEQARRSAYPSPTRDGKAKSGQYGNIVKLSKKGGLLAKIDITEDAQRKGARFQGIPRGSGSKTYGVWERQGRKGREGLKLLVAYTPYVKHRKFIDFFKVGEKVIKNTLPKEIHKQFLKRTRRR
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