Scaffold Ga0211577_10000665

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211577_10000665

Scaffold Ga0211577_10000665

Overview

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10000665 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34478
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (84.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064205	Metagenome / Metatranscriptome	129	N
F067201	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000066518	F067201	GGA	MDKVPVVKDKTFTLYLEEYEEYLIIHCDVYEWLKSTRKKMEVCLEYLLKQNNRPIYAEHLVNDAKHTKFLNIYGFKYYGVIQDDFGKQREIFVRGSK
Ga0211577_1000066534	F064205	AGGAG	MGFERKSQPKAAKTMEYENLTEGEHEARLIYVADLGMQNRTPFNGEVKPPAQQVSLCFEVLGSTIKIDDVEQPRIIWSKPFNIFGTMSGLSTEYEMFKAFVPTAKEDTIADWESVLGEPVNIIIKHVHRDGAVYDNVSGITAIPSKYRSKVDKAVTTEFSIAGSEDVDSPAIKSLFGLAKFVHDKRITGNVAPAKEPQPVIEEETFDDAVPF

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