Scaffold Ga0211577_10000648

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10000648
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34908
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (78.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F007645	Metagenome / Metatranscriptome	347	Y
F008134	Metagenome / Metatranscriptome	338	Y
F015800	Metagenome / Metatranscriptome	252	Y
F020816	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000064810	F015800	N/A	MKIDDKKILQVVNLSPSESWIEKIVDIHPMKQITVASIIQVSVFGLMLFAFWINDKAL
Ga0211577_1000064834	F004856	GGAGG	MSDWIEGTKPKIIEARYSAYLSWDLEELGIDWDEVEDWDLSRADLEITFKDGTKKTYENWQDLEIDYKHNFEEVLILDEDWEKVEGLN
Ga0211577_1000064837	F020816	AGGAGG	MMKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDDV
Ga0211577_1000064843	F007645	GGAG	MAKIVYGKRNTTTVDSIYDYGSITEKAIWNYANSLGVNIIRVRASKERYETTTGDTFNGYHAGKVSIYQQKPKPNKPLHFVRRTPLGKDNKGMQILEVATNIDTQQVLKTLQDYEYYTTNGFFARLGITFRRMFA
Ga0211577_1000064853	F008134	AGG	MPQLGSNDKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKTYRDNWDLIFNKGGNDANKEKE