Scaffold Ga0211577_10000584

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211577_10000584

Scaffold Ga0211577_10000584

Overview

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10000584 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	36512
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (19.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F050380	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000058431	F032280	N/A	MPDEITLKAINLLREADPNLDEMNSLDKFIAHQSEVLKMYKQFEGHPQADKLKPRLKVFEESALAFTWVHTQMMAYKREALLANANELEMCNAVIELKNELEILTKLKKNE
Ga0211577_1000058432	F019648	N/A	MNENELNLLDRFASKYKIDCVPSKGKYDFWDFTYEWDDRKFYCEMKQRSFTLDYAKEKYPEGLILEMHKYERILRKSKNEKSAQGLYINFFDCDSVLVFNLNKTRINNWVWRTMPESTDFGRKKFVYKYITFLEYDKGKVLYI
Ga0211577_100005844	F009843	N/A	MKKVEIGGQKRPIRFSYLALKDICNDCKLKLDEMQKLGTEVDHIGIIAYYGLKYGAKKNGEEFKYKVRDIEQWIDNEDFGKINEIFEAFQLDQPQKKGK
Ga0211577_1000058445	F009843	N/A	MKKVEIGGQKRPIRFSYLALKDICNDCKLKLDEMQKLGTEVDHIGIIAYYGLKYGAKKNGEEFKYKVRDIEQWIDNEDFGKINEIFEAFQFDQPQKKGK
Ga0211577_100005848	F050380	N/A	MAIKKRDGIRVKGINSLKNSLSELGIKPRQQRTQINKALRPAGNILARAMQRGYKREFNSNSDYKRKSGRTPTYKTIGIFTARKSREPGIFVGPLKRRTTPIRVKGKDSYNLTEMQILGNKIQKPRKDIFLEAANKVNLRVLNQAEKDLGKLLDKMIKQSGFR

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