Scaffold Ga0211577_10000163

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10000163
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67403
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (77.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041305	Metagenome / Metatranscriptome	160	Y
F063096	Metagenome / Metatranscriptome	130	Y
F088934	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_100001633	F041305	AGG	MTIRAKIRNAAKLKGKANAQQEIVATTMKIQAGELSLGDLADVNTSGTSDGVMMIYDGTAGEYKVTTQIENQNLNIIGGTY
Ga0211577_1000016341	F063096	AGG	MNITMNVIPVDIKEVKEFRAGYDLVMFEAGTDPMDGFVLLGFDEVSMISCANPRYAFIGAAA
Ga0211577_1000016367	F088934	GGAG	MSYIQIERLKKDRNEALYYQRKLIKKGKNVLAYKMEKKIVHLNQYLDDMEAISKIH