Scaffold Ga0211577_10000022

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10000022
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141669
• Total Scaffold Genes: 200
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (24.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004358	Metagenome / Metatranscriptome	442	Y
F007974	Metagenome / Metatranscriptome	341	Y
F036652	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_10000022133	F036652	N/A	MKTIQLSLHRSEDEPFLQKWEVARKCVFSAKLNAEHIDYPNAPTKLAELLFHVTNAPFEMLDKVHEKILLALWENCKKQDTFYSTSVGDVVKIHDHISGERTTLMCKSVGWEEL
Ga0211577_10000022182	F004358	N/A	MFGLVTMLLSTLGATGMGSMLKIVAGTIQSINEGREAKSKRELARDLSMANANVEFQKAIFGEVDKDTSMFTRGTRRIIALIGMLNFFVISVLCTIYPSVELVTFTPPENKEAVKILWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPAGKN
Ga0211577_10000022190	F007974	AGG	MAKKTKAGVDLRAPNPTKRKLMGRSSGPLVYNEHVRHLVTPKIDKAIKNNLEKKNGREG