Scaffold Ga0211475_10058797

Overview

Basic Information

• Taxon OID: 3300020468
• Scaffold ID: Ga0211475_10058797
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7392
  • Long. (^o): 14.3321
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F032335	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211475_100587975	F032335	GGAG	VKVSELKPGMLLRFKKPRVYKFLRDSGDDHWLDVGHATPNKTVKWAVVGQPLMIYLGQREMDAPSHYGNYRNVREVSIEGRKAWMWPDAWKYVEAV
Ga0211475_100587977	F005524	AGGAG	MIVGDKVQHYATGSIGTVIDSTYEISTPFQQMCVQWEDDKAPHRDSWERPDELSVIPHQTHNYTNPE